CRAN Package Check Results for Package Seurat

Last updated on 2018-08-14 22:50:59 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.3.4 69.34 364.77 434.11 NOTE
r-devel-linux-x86_64-debian-gcc 2.3.4 62.53 292.20 354.73 NOTE
r-devel-linux-x86_64-fedora-clang 2.3.4 532.46 NOTE
r-devel-linux-x86_64-fedora-gcc 2.3.4 512.31 NOTE
r-devel-windows-ix86+x86_64 2.3.4 215.00 686.00 901.00 NOTE
r-patched-linux-x86_64 2.3.4 75.30 331.01 406.31 NOTE
r-patched-solaris-x86 2.3.4 3.70 ERROR
r-release-linux-x86_64 2.3.4 68.33 326.58 394.91 NOTE
r-release-windows-ix86+x86_64 2.3.4 147.00 600.00 747.00 NOTE
r-release-osx-x86_64 2.3.4 NOTE
r-oldrel-windows-ix86+x86_64 2.3.4 181.00 375.00 556.00 ERROR
r-oldrel-osx-x86_64 2.3.4 NOTE

Check Details

Version: 2.3.4
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘loomR’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 2.3.4
Check: installed package size
Result: NOTE
     installed size is 7.9Mb
     sub-directories of 1Mb or more:
     libs 6.4Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-release-osx-x86_64, r-oldrel-osx-x86_64

Version: 2.3.4
Check: package dependencies
Result: ERROR
    Package required but not available: ‘hdf5r’
    
    Package suggested but not available for checking: ‘loomR’
    
    See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
    manual.
Flavor: r-patched-solaris-x86

Version: 2.3.4
Check: package dependencies
Result: NOTE
    Packages suggested but not available for checking:
     ‘loomR’ ‘made4’ ‘SingleCellExperiment’ ‘MAST’
Flavors: r-release-osx-x86_64, r-oldrel-osx-x86_64

Version: 2.3.4
Check: loading without being on the library search path
Result: WARN
    Loading required package: ggplot2
    Loading required package: cowplot
    
    Attaching package: 'cowplot'
    
    The following object is masked from 'package:ggplot2':
    
     ggsave
    
    Error: package 'Matrix' 1.2.12 was found, but >= 1.2.14 is required by 'Seurat'
    Execution halted
    
    It looks like this package has a loading problem when not on .libPaths:
    see the messages for details.
Flavors: r-oldrel-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 2.3.4
Check: running examples for arch ‘i386’
Result: ERROR
    Running examples in 'Seurat-Ex.R' failed
    The error occurred in:
    
    
    R version 3.4.4 (2018-03-15) -- "Someone to Lean On"
    Copyright (C) 2018 The R Foundation for Statistical Computing
    Platform: i386-w64-mingw32/i386 (32-bit)
    
    R is free software and comes with ABSOLUTELY NO WARRANTY.
    You are welcome to redistribute it under certain conditions.
    Type 'license()' or 'licence()' for distribution details.
    
     Natural language support but running in an English locale
    
    R is a collaborative project with many contributors.
    Type 'contributors()' for more information and
    'citation()' on how to cite R or R packages in publications.
    
    Type 'demo()' for some demos, 'help()' for on-line help, or
    'help.start()' for an HTML browser interface to help.
    Type 'q()' to quit R.
    
    > pkgname <- "Seurat"
    > source(file.path(R.home("share"), "R", "examples-header.R"))
    > options(warn = 1)
    > options(pager = "console")
    > library('Seurat')
    Loading required package: ggplot2
    Loading required package: cowplot
    
    Attaching package: 'cowplot'
    
    The following object is masked from 'package:ggplot2':
    
     ggsave
    
    Error: package 'Matrix' 1.2.12 was found, but >= 1.2.14 is required by 'Seurat'
    Execution halted
Flavor: r-oldrel-windows-ix86+x86_64

Version: 2.3.4
Check: running examples for arch ‘x64’
Result: ERROR
    Running examples in 'Seurat-Ex.R' failed
    The error occurred in:
    
    
    R version 3.4.4 (2018-03-15) -- "Someone to Lean On"
    Copyright (C) 2018 The R Foundation for Statistical Computing
    Platform: x86_64-w64-mingw32/x64 (64-bit)
    
    R is free software and comes with ABSOLUTELY NO WARRANTY.
    You are welcome to redistribute it under certain conditions.
    Type 'license()' or 'licence()' for distribution details.
    
     Natural language support but running in an English locale
    
    R is a collaborative project with many contributors.
    Type 'contributors()' for more information and
    'citation()' on how to cite R or R packages in publications.
    
    Type 'demo()' for some demos, 'help()' for on-line help, or
    'help.start()' for an HTML browser interface to help.
    Type 'q()' to quit R.
    
    > pkgname <- "Seurat"
    > source(file.path(R.home("share"), "R", "examples-header.R"))
    > options(warn = 1)
    > options(pager = "console")
    > library('Seurat')
    Loading required package: ggplot2
    Loading required package: cowplot
    
    Attaching package: 'cowplot'
    
    The following object is masked from 'package:ggplot2':
    
     ggsave
    
    Error: package 'Matrix' 1.2.12 was found, but >= 1.2.14 is required by 'Seurat'
    Execution halted
Flavor: r-oldrel-windows-ix86+x86_64

Version: 2.3.4
Check: running tests for arch ‘i386’
Result: ERROR
     Running 'testthat.R' [2s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > library(testthat)
     > library(Seurat)
     Loading required package: ggplot2
     Loading required package: cowplot
    
     Attaching package: 'cowplot'
    
     The following object is masked from 'package:ggplot2':
    
     ggsave
    
     Error: package 'Matrix' 1.2.12 was found, but >= 1.2.14 is required by 'Seurat'
     Execution halted
Flavor: r-oldrel-windows-ix86+x86_64

Version: 2.3.4
Check: running tests for arch ‘x64’
Result: ERROR
     Running 'testthat.R' [2s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > library(testthat)
     > library(Seurat)
     Loading required package: ggplot2
     Loading required package: cowplot
    
     Attaching package: 'cowplot'
    
     The following object is masked from 'package:ggplot2':
    
     ggsave
    
     Error: package 'Matrix' 1.2.12 was found, but >= 1.2.14 is required by 'Seurat'
     Execution halted
Flavor: r-oldrel-windows-ix86+x86_64