CASMAP: Detection of Statistically Significant Combinations of SNPs in Association Mapping

A significant pattern mining-based toolbox for region-based genome-wide association studies and higher-order epistasis analyses, implementing the methods described in Llinares-López et al. (2017) <doi:10.1093/bioinformatics/btx071>.

Version: 0.6.0
Depends: R (≥ 3.0.2)
Imports: methods, Rcpp
LinkingTo: Rcpp
Suggests: testthat, knitr, rmarkdown
Published: 2018-07-18
Author: Felipe Llinares-López [aut, cph], Laetitia Papaxanthos [aut, cph], Damian Roqueiro [aut, cph], Matthew Baker [ctr], Mikołaj Rybiński [ctr], Uwe Schmitt [ctr], Dean Bodenham [aut, cre, cph], Karsten Borgwardt [aut, fnd, cph]
Maintainer: Dean Bodenham <deanbodenhambsse at gmail.com>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: yes
SystemRequirements: C++11
CRAN checks: CASMAP results

Downloads:

Reference manual: CASMAP.pdf
Vignettes: CASMAP-introduction
Package source: CASMAP_0.6.0.tar.gz
Windows binaries: r-devel: CASMAP_0.5.9.zip, r-release: CASMAP_0.5.9.zip, r-oldrel: CASMAP_0.6.0.zip
OS X binaries: r-release: CASMAP_0.6.0.tgz, r-oldrel: CASMAP_0.6.0.tgz
Old sources: CASMAP archive

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