Last updated on 2023-02-05 16:52:52 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.7.7 | 8.38 | 101.66 | 110.04 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.7.7 | 6.92 | 76.21 | 83.13 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.7.7 | 132.10 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 0.7.7 | 138.54 | OK | |||
| r-devel-windows-x86_64 | 0.7.7 | 108.00 | 271.00 | 379.00 | OK | |
| r-patched-linux-x86_64 | 0.7.7 | 10.83 | 89.04 | 99.87 | OK | |
| r-release-linux-x86_64 | 0.7.7 | 8.04 | 81.13 | 89.17 | ERROR | |
| r-release-macos-arm64 | 0.7.7 | 197.00 | OK | |||
| r-release-macos-x86_64 | 0.7.7 | 1485.00 | OK | |||
| r-release-windows-x86_64 | 0.7.7 | 100.00 | 269.00 | 369.00 | OK | |
| r-oldrel-macos-arm64 | 0.7.7 | 194.00 | OK | |||
| r-oldrel-macos-x86_64 | 0.7.7 | 213.00 | OK | |||
| r-oldrel-windows-ix86+x86_64 | 0.7.7 | 15.00 | 130.00 | 145.00 | WARN |
Version: 0.7.7
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘rbioapi.Rmd’ using rmarkdown
--- finished re-building ‘rbioapi.Rmd’
--- re-building ‘rbioapi_do_enrich.Rmd’ using rmarkdown
--- finished re-building ‘rbioapi_do_enrich.Rmd’
--- re-building ‘rbioapi_enrichr.Rmd’ using rmarkdown
--- finished re-building ‘rbioapi_enrichr.Rmd’
--- re-building ‘rbioapi_jaspar.Rmd’ using rmarkdown
--- finished re-building ‘rbioapi_jaspar.Rmd’
--- re-building ‘rbioapi_mieaa.Rmd’ using rmarkdown
Quitting from lines 71-90 (rbioapi_mieaa.Rmd)
Error: processing vignette ‘rbioapi_mieaa.Rmd’ failed with diagnostics:
subscript out of bounds
--- failed re-building ‘rbioapi_mieaa.Rmd’
--- re-building ‘rbioapi_panther.Rmd’ using rmarkdown
--- finished re-building ‘rbioapi_panther.Rmd’
--- re-building ‘rbioapi_reactome.Rmd’ using rmarkdown
--- finished re-building ‘rbioapi_reactome.Rmd’
--- re-building ‘rbioapi_string.Rmd’ using rmarkdown
--- finished re-building ‘rbioapi_string.Rmd’
--- re-building ‘rbioapi_uniprot.Rmd’ using rmarkdown
--- finished re-building ‘rbioapi_uniprot.Rmd’
SUMMARY: processing the following file failed:
‘rbioapi_mieaa.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.7.7
Check: tests
Result: ERROR
Running ‘testthat.R’ [5s/168s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(rbioapi)
>
> test_check("rbioapi")
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 117 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-api_calls_rba_skeleton.R:41'): .rba_skeleton works ─────────────
Error: Timeout was reached: [httpbin.org] Operation timed out after 30001 milliseconds with 0 bytes received
Backtrace:
▆
1. ├─testthat::expect_invisible(call = .rba_skeleton(input_call = request)) at test-api_calls_rba_skeleton.R:41:2
2. │ └─base::withVisible(call)
3. └─rbioapi:::.rba_skeleton(input_call = request)
4. └─rbioapi:::.rba_api_call(...)
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 117 ]
Error: Test failures
Execution halted
Flavor: r-release-linux-x86_64
Version: 0.7.7
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
--- re-building 'rbioapi.Rmd' using rmarkdown
Error: processing vignette 'rbioapi.Rmd' failed with diagnostics:
Using anchor_sections requires Pandoc 2.0+
--- failed re-building 'rbioapi.Rmd'
--- re-building 'rbioapi_do_enrich.Rmd' using rmarkdown
Error: processing vignette 'rbioapi_do_enrich.Rmd' failed with diagnostics:
Using anchor_sections requires Pandoc 2.0+
--- failed re-building 'rbioapi_do_enrich.Rmd'
--- re-building 'rbioapi_enrichr.Rmd' using rmarkdown
Error: processing vignette 'rbioapi_enrichr.Rmd' failed with diagnostics:
Using anchor_sections requires Pandoc 2.0+
--- failed re-building 'rbioapi_enrichr.Rmd'
--- re-building 'rbioapi_jaspar.Rmd' using rmarkdown
Error: processing vignette 'rbioapi_jaspar.Rmd' failed with diagnostics:
Using anchor_sections requires Pandoc 2.0+
--- failed re-building 'rbioapi_jaspar.Rmd'
--- re-building 'rbioapi_mieaa.Rmd' using rmarkdown
Error: processing vignette 'rbioapi_mieaa.Rmd' failed with diagnostics:
Using anchor_sections requires Pandoc 2.0+
--- failed re-building 'rbioapi_mieaa.Rmd'
--- re-building 'rbioapi_panther.Rmd' using rmarkdown
Error: processing vignette 'rbioapi_panther.Rmd' failed with diagnostics:
Using anchor_sections requires Pandoc 2.0+
--- failed re-building 'rbioapi_panther.Rmd'
--- re-building 'rbioapi_reactome.Rmd' using rmarkdown
Error: processing vignette 'rbioapi_reactome.Rmd' failed with diagnostics:
Using anchor_sections requires Pandoc 2.0+
--- failed re-building 'rbioapi_reactome.Rmd'
--- re-building 'rbioapi_string.Rmd' using rmarkdown
Error: processing vignette 'rbioapi_string.Rmd' failed with diagnostics:
Using anchor_sections requires Pandoc 2.0+
--- failed re-building 'rbioapi_string.Rmd'
--- re-building 'rbioapi_uniprot.Rmd' using rmarkdown
Error: processing vignette 'rbioapi_uniprot.Rmd' failed with diagnostics:
Using anchor_sections requires Pandoc 2.0+
--- failed re-building 'rbioapi_uniprot.Rmd'
SUMMARY: processing the following files failed:
'rbioapi.Rmd' 'rbioapi_do_enrich.Rmd' 'rbioapi_enrichr.Rmd'
'rbioapi_jaspar.Rmd' 'rbioapi_mieaa.Rmd' 'rbioapi_panther.Rmd'
'rbioapi_reactome.Rmd' 'rbioapi_string.Rmd' 'rbioapi_uniprot.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavor: r-oldrel-windows-ix86+x86_64