CRAN Package Check Results for Package rbioapi

Last updated on 2023-02-05 16:52:52 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.7.7 8.38 101.66 110.04 OK
r-devel-linux-x86_64-debian-gcc 0.7.7 6.92 76.21 83.13 ERROR
r-devel-linux-x86_64-fedora-clang 0.7.7 132.10 OK
r-devel-linux-x86_64-fedora-gcc 0.7.7 138.54 OK
r-devel-windows-x86_64 0.7.7 108.00 271.00 379.00 OK
r-patched-linux-x86_64 0.7.7 10.83 89.04 99.87 OK
r-release-linux-x86_64 0.7.7 8.04 81.13 89.17 ERROR
r-release-macos-arm64 0.7.7 197.00 OK
r-release-macos-x86_64 0.7.7 1485.00 OK
r-release-windows-x86_64 0.7.7 100.00 269.00 369.00 OK
r-oldrel-macos-arm64 0.7.7 194.00 OK
r-oldrel-macos-x86_64 0.7.7 213.00 OK
r-oldrel-windows-ix86+x86_64 0.7.7 15.00 130.00 145.00 WARN

Check Details

Version: 0.7.7
Check: re-building of vignette outputs
Result: ERROR
    Error(s) in re-building vignettes:
     ...
    --- re-building ‘rbioapi.Rmd’ using rmarkdown
    --- finished re-building ‘rbioapi.Rmd’
    
    --- re-building ‘rbioapi_do_enrich.Rmd’ using rmarkdown
    --- finished re-building ‘rbioapi_do_enrich.Rmd’
    
    --- re-building ‘rbioapi_enrichr.Rmd’ using rmarkdown
    --- finished re-building ‘rbioapi_enrichr.Rmd’
    
    --- re-building ‘rbioapi_jaspar.Rmd’ using rmarkdown
    --- finished re-building ‘rbioapi_jaspar.Rmd’
    
    --- re-building ‘rbioapi_mieaa.Rmd’ using rmarkdown
    Quitting from lines 71-90 (rbioapi_mieaa.Rmd)
    Error: processing vignette ‘rbioapi_mieaa.Rmd’ failed with diagnostics:
    subscript out of bounds
    --- failed re-building ‘rbioapi_mieaa.Rmd’
    
    --- re-building ‘rbioapi_panther.Rmd’ using rmarkdown
    --- finished re-building ‘rbioapi_panther.Rmd’
    
    --- re-building ‘rbioapi_reactome.Rmd’ using rmarkdown
    --- finished re-building ‘rbioapi_reactome.Rmd’
    
    --- re-building ‘rbioapi_string.Rmd’ using rmarkdown
    --- finished re-building ‘rbioapi_string.Rmd’
    
    --- re-building ‘rbioapi_uniprot.Rmd’ using rmarkdown
    --- finished re-building ‘rbioapi_uniprot.Rmd’
    
    SUMMARY: processing the following file failed:
     ‘rbioapi_mieaa.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc

Version: 0.7.7
Check: tests
Result: ERROR
     Running ‘testthat.R’ [5s/168s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library(testthat)
     > library(rbioapi)
     >
     > test_check("rbioapi")
     [ FAIL 1 | WARN 0 | SKIP 0 | PASS 117 ]
    
     ══ Failed tests ════════════════════════════════════════════════════════════════
     ── Error ('test-api_calls_rba_skeleton.R:41'): .rba_skeleton works ─────────────
     Error: Timeout was reached: [httpbin.org] Operation timed out after 30001 milliseconds with 0 bytes received
     Backtrace:
     ▆
     1. ├─testthat::expect_invisible(call = .rba_skeleton(input_call = request)) at test-api_calls_rba_skeleton.R:41:2
     2. │ └─base::withVisible(call)
     3. └─rbioapi:::.rba_skeleton(input_call = request)
     4. └─rbioapi:::.rba_api_call(...)
    
     [ FAIL 1 | WARN 0 | SKIP 0 | PASS 117 ]
     Error: Test failures
     Execution halted
Flavor: r-release-linux-x86_64

Version: 0.7.7
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building 'rbioapi.Rmd' using rmarkdown
    Error: processing vignette 'rbioapi.Rmd' failed with diagnostics:
    Using anchor_sections requires Pandoc 2.0+
    --- failed re-building 'rbioapi.Rmd'
    
    --- re-building 'rbioapi_do_enrich.Rmd' using rmarkdown
    Error: processing vignette 'rbioapi_do_enrich.Rmd' failed with diagnostics:
    Using anchor_sections requires Pandoc 2.0+
    --- failed re-building 'rbioapi_do_enrich.Rmd'
    
    --- re-building 'rbioapi_enrichr.Rmd' using rmarkdown
    Error: processing vignette 'rbioapi_enrichr.Rmd' failed with diagnostics:
    Using anchor_sections requires Pandoc 2.0+
    --- failed re-building 'rbioapi_enrichr.Rmd'
    
    --- re-building 'rbioapi_jaspar.Rmd' using rmarkdown
    Error: processing vignette 'rbioapi_jaspar.Rmd' failed with diagnostics:
    Using anchor_sections requires Pandoc 2.0+
    --- failed re-building 'rbioapi_jaspar.Rmd'
    
    --- re-building 'rbioapi_mieaa.Rmd' using rmarkdown
    Error: processing vignette 'rbioapi_mieaa.Rmd' failed with diagnostics:
    Using anchor_sections requires Pandoc 2.0+
    --- failed re-building 'rbioapi_mieaa.Rmd'
    
    --- re-building 'rbioapi_panther.Rmd' using rmarkdown
    Error: processing vignette 'rbioapi_panther.Rmd' failed with diagnostics:
    Using anchor_sections requires Pandoc 2.0+
    --- failed re-building 'rbioapi_panther.Rmd'
    
    --- re-building 'rbioapi_reactome.Rmd' using rmarkdown
    Error: processing vignette 'rbioapi_reactome.Rmd' failed with diagnostics:
    Using anchor_sections requires Pandoc 2.0+
    --- failed re-building 'rbioapi_reactome.Rmd'
    
    --- re-building 'rbioapi_string.Rmd' using rmarkdown
    Error: processing vignette 'rbioapi_string.Rmd' failed with diagnostics:
    Using anchor_sections requires Pandoc 2.0+
    --- failed re-building 'rbioapi_string.Rmd'
    
    --- re-building 'rbioapi_uniprot.Rmd' using rmarkdown
    Error: processing vignette 'rbioapi_uniprot.Rmd' failed with diagnostics:
    Using anchor_sections requires Pandoc 2.0+
    --- failed re-building 'rbioapi_uniprot.Rmd'
    
    SUMMARY: processing the following files failed:
     'rbioapi.Rmd' 'rbioapi_do_enrich.Rmd' 'rbioapi_enrichr.Rmd'
     'rbioapi_jaspar.Rmd' 'rbioapi_mieaa.Rmd' 'rbioapi_panther.Rmd'
     'rbioapi_reactome.Rmd' 'rbioapi_string.Rmd' 'rbioapi_uniprot.Rmd'
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-oldrel-windows-ix86+x86_64