GOCompare: Comprehensive GO Terms Comparison Between Species

Supports the assessment of functional enrichment analyses obtained for several lists of genes and provides a workflow to analyze them between two species via weighted graphs. Methods are described in Sosa et al. (2022) (to be submitted).

Version: 1.0.0
Depends: R (≥ 4.0.0)
Imports: base (≥ 3.5), utils (≥ 3.5), methods (≥ 3.5), stats, grDevices, ape, vegan, ggplot2, ggrepel, igraph, parallel, stringr
Suggests: testthat (≥ 3.0.0)
Published: 2021-12-06
Author: Chrystian Camilo Sosa ORCID iD [aut, cre, cph], Diana Carolina Clavijo-Buriticá [aut], Mauricio Alberto Quimbaya [aut], Maria Victoria Diaz [ctb], Camila Riccio Rengifo [ctb], Nicolas López-Rozo [ctb], Arlen James Mosquera [ctb], Andrés Álvarez [ctb]
Maintainer: Chrystian Camilo Sosa <ccsosaa at javerianacali.edu.co>
BugReports: https://github.com/ccsosa/GOCompare/issues
License: GPL-3
URL: https://github.com/ccsosa/GOCompare
NeedsCompilation: no
CRAN checks: GOCompare results

Documentation:

Reference manual: GOCompare.pdf

Downloads:

Package source: GOCompare_1.0.0.tar.gz
Windows binaries: r-devel: GOCompare_1.0.0.zip, r-release: GOCompare_1.0.0.zip, r-oldrel: GOCompare_1.0.0.zip
macOS binaries: r-release (arm64): GOCompare_1.0.0.tgz, r-release (x86_64): GOCompare_1.0.0.tgz, r-oldrel: GOCompare_1.0.0.tgz

Linking:

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