MicrobiomeStat: Statistical Methods for Microbiome Compositional Data

A suite of methods for powerful and robust microbiome data analysis addressing zero-inflation, phylogenetic structure and compositional effects (Zhou et al. (2021)<arXiv:2104.00242>). The methods can be applied to the analysis of other (high-dimensional) compositional data arising from sequencing experiments.

Version: 1.1
Depends: R (≥ 3.5.0)
Imports: ggplot2, matrixStats, Matrix, parallel, stats, utils, statmod, MASS, ggrepel, lmerTest, foreach, modeest, phyloseq
Published: 2022-01-24
Author: Xianyang Zhang [aut], Jun Chen [aut, cre], Huijuan Zhou [ctb]
Maintainer: Jun Chen <chen.jun2 at mayo.edu>
License: GPL-3
NeedsCompilation: yes
CRAN checks: MicrobiomeStat results

Documentation:

Reference manual: MicrobiomeStat.pdf

Downloads:

Package source: MicrobiomeStat_1.1.tar.gz
Windows binaries: r-devel: MicrobiomeStat_1.1.zip, r-release: MicrobiomeStat_1.0.zip, r-oldrel: MicrobiomeStat_1.0.zip
macOS binaries: r-release (arm64): MicrobiomeStat_1.0.tgz, r-release (x86_64): MicrobiomeStat_1.1.tgz, r-oldrel: MicrobiomeStat_1.1.tgz
Old sources: MicrobiomeStat archive

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