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Typical morphological profiling datasets have millions of cells and hundreds of features per cell. When working with this data, you must

The cytominer package makes these steps fast and easy.


You can install cytominer from CRAN:


Or, install the development version from GitHub:

# install.packages("devtools")
devtools::install_github("cytomining/cytominer", dependencies = TRUE, build_vignettes = TRUE)

Occasionally, the Suggests dependencies may not get installed, depending on your system, so you’d need to install those explicitly.


See vignette("cytominer-pipeline") for basic example of using cytominer to analyze a morphological profiling dataset.