gscramble: Simulating Admixed Genotypes Without Replacement

A genomic simulation approach for creating biologically informed individual genotypes from empirical data that 1) samples alleles from populations without replacement, 2) segregates alleles based on species-specific recombination rates. 'gscramble' is a flexible simulation approach that allows users to create pedigrees of varying complexity in order to simulate admixed genotypes. Furthermore, it allows users to track haplotype blocks from the source populations through the pedigrees.

Version: 1.0.1
Depends: R (≥ 3.5.0)
Imports: dplyr, ggplot2, glue, magrittr, purrr, readr, rlang, stats, stringr, tibble, tidyr
Suggests: cowplot, knitr, rmarkdown, tidyverse
Published: 2024-02-28
Author: Eric C. Anderson ORCID iD [aut, cre], Rachael M. Giglio ORCID iD [aut], Matt G. DeSaix ORCID iD [aut], Timothy J. Smyser ORCID iD [aut]
Maintainer: Eric C. Anderson <eric.anderson at noaa.gov>
BugReports: https://github.com/eriqande/gscramble/issues
License: CC0
URL: https://github.com/eriqande/gscramble
NeedsCompilation: no
Materials: README NEWS
CRAN checks: gscramble results

Documentation:

Reference manual: gscramble.pdf
Vignettes: Pedigrees Available from create_GSP()
A first tutorial for 'gscramble'
Permutation Options in 'gscramble'

Downloads:

Package source: gscramble_1.0.1.tar.gz
Windows binaries: r-prerel: gscramble_1.0.1.zip, r-release: gscramble_1.0.1.zip, r-oldrel: gscramble_1.0.1.zip
macOS binaries: r-prerel (arm64): gscramble_1.0.1.tgz, r-release (arm64): gscramble_1.0.1.tgz, r-oldrel (arm64): gscramble_1.0.1.tgz, r-prerel (x86_64): gscramble_1.0.1.tgz, r-release (x86_64): gscramble_1.0.1.tgz

Linking:

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